cisformer package
=================

Subpackages
-----------

.. toctree::
   :maxdepth: 4

   cisformer.M2Mmodel

Submodules
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cisformer.atac2rna\_predict module
----------------------------------

.. automodule:: cisformer.atac2rna_predict
   :members:
   :undoc-members:
   :show-inheritance:

cisformer.atac2rna\_surround\_attention\_generate module
--------------------------------------------------------

.. automodule:: cisformer.atac2rna_surround_attention_generate
   :members:
   :undoc-members:
   :show-inheritance:

cisformer.atac2rna\_train module
--------------------------------

.. automodule:: cisformer.atac2rna_train
   :members:
   :undoc-members:
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cisformer.compute\_surround\_enhancer module
--------------------------------------------

.. automodule:: cisformer.compute_surround_enhancer
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   :undoc-members:
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cisformer.data\_preprocess module
---------------------------------

.. automodule:: cisformer.data_preprocess
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cisformer.generate\_default\_config module
------------------------------------------

.. automodule:: cisformer.generate_default_config
   :members:
   :undoc-members:
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cisformer.map\_rna\_atac module
-------------------------------

.. automodule:: cisformer.map_rna_atac
   :members:
   :undoc-members:
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cisformer.rna2atac\_predict module
----------------------------------

.. automodule:: cisformer.rna2atac_predict
   :members:
   :undoc-members:
   :show-inheritance:

cisformer.rna2atac\_train module
--------------------------------

.. automodule:: cisformer.rna2atac_train
   :members:
   :undoc-members:
   :show-inheritance:

cisformer.runner module
-----------------------

.. automodule:: cisformer.runner
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   :undoc-members:
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Module contents
---------------

.. automodule:: cisformer
   :members:
   :undoc-members:
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